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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
64
total RNA-seq
22
ChIP-seq
6
snATAC-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
170
Transcription
82
DNA accessibility
22
DNA binding
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
control
7
broad histone mark
7
narrow histone mark
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
306
October, 2019
278
August, 2021
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
113
tsv
92
bed narrowPeak
64
xls
57
txt
49
bam
33
bigWig
24
tagAlign
bed bed3+
1
hic
Organism
277
Homo sapiens
Biosample type
227
tissue
40
in vitro differentiated cells
10
cell line
1
primary cell
Organ
128
kidney
92
heart
8
embryo
6
blood vessel
6
vasculature
3
connective tissue
3
epithelium
2
artery
2
pancreas
1
adipose tissue
1
liver
Project
278
AMP
Genome assembly (visualization)
102
GRCh38
40
hg19
Lab
148
AMP-T2D consortium
128
Katalin Susztak, Upenn
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
files.file_type!
bed bed3+
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
278 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
osteoblast
1
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
1
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