Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
13
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
57
Transcription
13
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
180
August, 2017
162
May, 2022
133
February, 2021
125
May, 2020
124
February, 2023
109
October, 2019
93
May, 2021
93
November, 2017
90
August, 2021
59
September, 2020
47
September, 2023
36
July, 2019
29
October, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
16
March, 2020
15
April, 2019
15
May, 2023
15
November, 2018
11
October, 2017
10
November, 2020
8
February, 2018
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
November, 2019
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
1
September, 2018
Available data
tsv
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
89
Homo sapiens
Biosample type
66
tissue
13
cell line
10
in vitro differentiated cells
1
primary cell
Organ
66
kidney
9
liver
3
connective tissue
3
epithelium
3
pancreas
1
adipose tissue
Project
90
AMP
Genome assembly (visualization)
4
hg19
Lab
64
Katalin Susztak, Upenn
12
AMP-T2D consortium
12
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bed narrowPeak
tsv
BIOSAMPLE
ASSAY
90 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
Download