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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ATAC-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
80
DNA accessibility
13
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
146
February, 2021
139
August, 2017
120
May, 2022
108
February, 2023
107
August, 2021
93
October, 2019
89
May, 2021
79
May, 2020
72
November, 2017
42
March, 2020
30
November, 2019
29
October, 2018
23
July, 2019
23
May, 2019
22
December, 2017
16
January, 2021
15
April, 2019
11
May, 2023
11
November, 2020
10
April, 2020
9
October, 2017
8
February, 2018
8
June, 2019
7
November, 2018
6
September, 2017
5
December, 2018
5
March, 2019
4
January, 2019
4
October, 2022
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
106
bed narrowPeak
64
xls
34
bam
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
106
Homo sapiens
Biosample type
73
tissue
20
in vitro differentiated cells
13
cell line
1
primary cell
Organ
73
kidney
9
liver
3
connective tissue
3
epithelium
3
pancreas
1
adipose tissue
Project
107
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
71
Katalin Susztak, Upenn
22
AMP-T2D consortium
12
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
assay_slims!
Transcription
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
cell line
HepG2
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
1
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