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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
total RNA-seq
18
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
72
DNA accessibility
18
DNA binding
8
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
176
May, 2021
172
May, 2022
109
August, 2021
47
September, 2023
45
February, 2021
43
September, 2020
21
February, 2023
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
80
bed narrowPeak
64
xls
16
bigWig
8
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
109
Homo sapiens
Biosample type
80
tissue
25
cell line
4
in vitro differentiated cells
Organ
81
kidney
22
liver
4
connective tissue
1
pancreas
Project
109
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
AMP-T2D consortium
79
Katalin Susztak, Upenn
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
64
8
6
1
islet of Langerhans
1
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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