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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
64
total RNA-seq
25
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
1
RNA microarray
Assay category
82
DNA accessibility
78
Transcription
25
DNA binding
1
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
200
May, 2022
191
August, 2021
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
92
bed narrowPeak
64
xls
57
txt
49
bam
33
bigWig
24
tagAlign
21
tsv
5
bed bed3+
1
hic
Organism
190
Homo sapiens
Biosample type
135
tissue
42
in vitro differentiated cells
10
cell line
4
primary cell
Organ
128
kidney
heart
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
liver
2
artery
2
pancreas
1
adipose tissue
Project
191
AMP
Genome assembly (visualization)
105
GRCh38
45
hg19
Lab
128
Katalin Susztak, Upenn
59
AMP-T2D consortium
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
lab.title!
Bing Ren, UCSD
organ_slims!
heart
BIOSAMPLE
ASSAY
191 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
64
49
8
6
1
aorta
4
pulmonary artery
2
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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