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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
ChIP-seq
25
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
123
Transcription
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Date released
707
February, 2021
291
May, 2020
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
148
August, 2021
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
1
May, 2023
Available data
123
tsv
25
bam
17
bigWig
12
bed narrowPeak
2
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
147
Homo sapiens
Biosample type
101
tissue
26
cell line
21
in vitro differentiated cells
Organ
92
heart
13
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
2
kidney
1
adipose tissue
Project
148
AMP
Genome assembly (visualization)
30
hg19
25
GRCh38
Lab
Katalin Susztak, Upenn
126
AMP-T2D consortium
18
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
148 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
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cell line
HepG2
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
10
adipocyte
1
1
osteoblast
1
1
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