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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
64
total RNA-seq
25
ChIP-seq
6
snATAC-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
170
Transcription
80
DNA accessibility
25
DNA binding
1
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
279
August, 2021
218
June, 2019
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
October, 2022
Available data
113
tsv
90
bed narrowPeak
64
xls
57
txt
49
bam
31
bigWig
24
tagAlign
3
bed bed3+
1
hic
Organism
278
Homo sapiens
Biosample type
227
tissue
38
in vitro differentiated cells
10
cell line
4
primary cell
Organ
128
kidney
92
heart
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
liver
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
Project
279
AMP
Genome assembly (visualization)
105
GRCh38
41
hg19
Lab
151
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
279 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
21
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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