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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
total RNA-seq
98
single cell RNA-seq
39
ATAC-seq
36
ChIP-seq
2
Capture-C
1
DNAme array
1
RNA microarray
Assay category
236
Transcription
39
DNA accessibility
36
DNA binding
1
DNA methylation
Target of assay
23
histone
23
histone modification
13
narrow histone mark
10
broad histone mark
9
control
4
transcription factor
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
235
tsv
191
bam
159
bigWig
45
bed narrowPeak
30
tagAlign
3
bed bed3+
Organism
314
Homo sapiens
Biosample type
137
tissue
123
in vitro differentiated cells
31
cell line
24
primary cell
Organ
95
heart
62
pancreas
32
epithelium
10
embryo
6
blood vessel
6
vasculature
4
liver
2
artery
2
connective tissue
1
adipose tissue
Project
314
AMP
1
T1D
Genome assembly (visualization)
182
GRCh38
181
hg19
Lab
315
AMP-T2D consortium
235
Kyle Gaulton, UCSD
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
91
inconsistent ontology term
BIOSAMPLE
ASSAY
315 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
Capture-C
DNAme array
RNA microarray
tissue
islet of Langerhans
36
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
10
21
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
EndoC_BH1
4
16
1
2
H1-hESC
8
primary cell
monocyte
1
13
1
1
hepatocyte
4
naive thymus-derived CD4-positive, alpha-beta T cell
2
embryonic stem cell
1
neutrophil
1
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