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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
180
Transcription
43
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
363
May, 2021
291
October, 2019
282
August, 2017
243
February, 2021
241
May, 2020
240
August, 2021
200
June, 2019
166
July, 2018
123
May, 2022
120
May, 2019
98
February, 2023
94
December, 2017
87
November, 2018
84
July, 2019
80
April, 2019
59
September, 2018
58
March, 2020
56
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
December, 2018
35
November, 2019
30
January, 2019
23
February, 2020
19
April, 2020
16
January, 2021
15
October, 2017
10
December, 2019
10
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
3
May, 2023
1
August, 2022
1
March, 2019
Available data
123
tsv
57
txt
45
bigWig
39
bam
30
bed narrowPeak
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
240
Homo sapiens
Biosample type
164
tissue
44
cell line
28
in vitro differentiated cells
4
primary cell
Organ
92
heart
66
kidney
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
pancreas
connective tissue
2
artery
1
adipose tissue
Project
240
AMP
Genome assembly (visualization)
46
hg19
31
GRCh38
Lab
140
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
month_released!
December, 2018
organ_slims!
connective tissue
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
240 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
21
primary cell
hepatocyte
4
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