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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
83
ATAC-seq
74
total RNA-seq
58
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
89
DNA accessibility
58
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
32
histone
32
histone modification
19
broad histone mark
15
control
13
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
October, 2022
3
June, 2018
1
August, 2022
Available data
123
tsv
118
bed narrowPeak
64
bam
64
xls
60
bigWig
57
txt
38
tagAlign
16
fastq
6
bigBed narrowPeak
5
bed bed3+
3
bed broadPeak
2
bedpe bed3+
2
hic
1
vcf
Organism
340
Homo sapiens
Biosample type
251
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
35
liver
16
brain
8
embryo
8
pancreas
6
blood vessel
6
connective tissue
6
epithelium
6
vasculature
2
adipose tissue
2
artery
1
spleen
Project
341
AMP
Genome assembly (visualization)
118
GRCh38
72
hg19
Lab
173
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
October, 2022
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
341 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 16 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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