Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
107
single cell RNA-seq
74
total RNA-seq
7
WGBS
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
181
Transcription
113
DNA binding
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
75
transcription factor
22
RNA binding protein
20
histone
20
histone modification
18
control
16
recombinant protein
11
narrow histone mark
9
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
123
tsv
116
bam
115
bigWig
93
bed narrowPeak
78
fastq
63
bigBed narrowPeak
57
txt
24
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
5
bed bed3+
2
bedpe bed3+
2
hic
1
csv
1
vcf
Organism
314
Homo sapiens
Biosample type
175
tissue
105
cell line
30
in vitro differentiated cells
5
primary cell
Organ
92
heart
85
liver
60
kidney
15
blood
15
bodily fluid
8
embryo
8
pancreas
8
spleen
6
blood vessel
6
epithelium
6
vasculature
3
connective tissue
2
artery
1
adipose tissue
Project
315
AMP
Genome assembly (visualization)
109
hg19
101
GRCh38
Lab
219
AMP-T2D consortium
58
Katalin Susztak, Upenn
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
September, 2020
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
315 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 15 more…
cell line
HepG2
63
9
1
2
1
1
GM12878
15
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
pancreatic cell
1
See all biosamples
Download