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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
105
ChIP-seq
76
ATAC-seq
57
total RNA-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
163
Transcription
105
DNA binding
82
DNA accessibility
2
3D chromatin structure
Target of assay
77
histone
77
histone modification
45
broad histone mark
32
narrow histone mark
22
control
6
transcription factor
4
RNA binding protein
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
157
bed narrowPeak
120
bam
106
tsv
90
bigWig
64
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
354
Homo sapiens
Biosample type
309
tissue
cell line
42
in vitro differentiated cells
4
primary cell
Organ
151
kidney
149
heart
6
blood vessel
6
vasculature
5
connective tissue
4
epithelium
4
liver
2
artery
2
pancreas
1
adipose tissue
Project
355
AMP
Genome assembly (visualization)
161
GRCh38
102
hg19
Lab
221
AMP-T2D consortium
128
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
biosample_type!
cell line
BIOSAMPLE
ASSAY
355 results
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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
23
64
49
6
1
heart left ventricle
18
35
heart right ventricle
17
13
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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