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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
DNA binding
24
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Date released
194
May, 2021
162
February, 2021
148
May, 2020
134
May, 2022
110
February, 2023
59
September, 2020
48
July, 2018
47
August, 2021
43
April, 2018
41
September, 2018
31
July, 2019
25
October, 2019
24
June, 2019
23
March, 2020
15
February, 2018
12
November, 2020
8
January, 2021
8
November, 2019
7
August, 2017
7
August, 2020
7
December, 2019
6
January, 2018
5
January, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
November, 2018
2
October, 2018
1
December, 2018
0
April, 2019
Available data
25
bam
24
tsv
17
bigWig
12
bed narrowPeak
2
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
47
Homo sapiens
Biosample type
tissue
26
cell line
21
in vitro differentiated cells
Organ
13
liver
8
embryo
4
connective tissue
2
epithelium
2
kidney
2
pancreas
Project
47
AMP
Genome assembly (visualization)
30
hg19
25
GRCh38
Lab
27
AMP-T2D consortium
16
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
47 results
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Clear Filters
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
10
adipocyte
1
1
osteoblast
1
1
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