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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
80
ChIP-seq
64
ATAC-seq
50
total RNA-seq
6
snATAC-seq
2
Hi-C
1
RNA microarray
Assay category
156
Transcription
80
DNA binding
70
DNA accessibility
2
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
129
bed narrowPeak
99
tsv
79
bam
65
bigWig
64
bigBed narrowPeak
64
xls
57
txt
1
bedpe bed3+
1
hic
Organism
308
Homo sapiens
Biosample type
309
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
151
kidney
149
heart
6
blood vessel
6
vasculature
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
Project
309
AMP
Genome assembly (visualization)
128
GRCh38
66
hg19
Lab
179
AMP-T2D consortium
128
Katalin Susztak, Upenn
2
Bing Ren, UCSD
BIOSAMPLE
ASSAY
309 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
RNA microarray
tissue
kidney
8
23
64
49
6
1
heart left ventricle
18
35
heart right ventricle
17
13
left cardiac atrium
18
right cardiac atrium
18
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