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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
15
total RNA-seq
12
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
106
DNA binding
15
Transcription
12
DNA accessibility
2
3D chromatin structure
Target of assay
53
transcription factor
48
histone
48
histone modification
26
narrow histone mark
22
broad histone mark
5
RNA binding protein
5
control
3
chromatin remodeller
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
118
bigWig
117
bam
113
bed narrowPeak
77
fastq
50
bigBed narrowPeak
20
bed bed3+
15
tagAlign
15
tsv
2
hic
1
bedpe bed3+
Organism
137
Homo sapiens
Biosample type
71
in vitro differentiated cells
37
tissue
23
cell line
3
primary cell
3
stem cell
Organ
68
liver
19
epithelium
17
embryo
4
connective tissue
1
kidney
Project
137
AMP
Genome assembly (visualization)
182
GRCh38
137
hg19
Lab
117
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
137 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
Hi-C
in vitro differentiated cells
neural progenitor cell
12
7
10
hepatocyte
14
pancreatic endoderm
7
Posterior foregut
5
definitive endodermal cell
5
+ See 4 more…
tissue
liver
29
right lobe of liver
7
kidney
1
cell line
HepG2
14
1
H1-hESC
8
primary cell
hepatocyte
3
stem cell
hESC
3
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