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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
590
total RNA-seq
124
single cell RNA-seq
85
RNA microarray
82
ATAC-seq
33
snATAC-seq
30
ChIP-seq
6
WGBS
5
STARR-seq
3
Hi-C
3
snDrop-seq
2
Capture-C
2
pCHi-C
1
whole genome sequencing assay
Assay category
714
Transcription
115
DNA accessibility
30
DNA binding
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
16
transcription factor
8
control
6
histone
6
histone modification
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
653
tsv
562
bam
554
bigWig
146
txt
104
bed narrowPeak
64
xls
45
fastq
12
tagAlign
6
csv
5
bed bed3+
2
bed bed3
2
bedpe bed3+
2
hic
1
vcf
Organism
965
Homo sapiens
Biosample type
774
tissue
140
cell line
in vitro differentiated cells
52
primary cell
Organ
448
connective tissue
387
adipose tissue
158
heart
150
bone element
138
kidney
72
blood vessel
72
vasculature
68
artery
38
epithelium
38
liver
36
pancreas
8
embryo
8
skeleton
6
limb
Project
921
AMP
45
HPAP
Genome assembly (visualization)
621
GRCh38
575
hg19
Lab
757
AMP-T2D consortium
128
Katalin Susztak, Upenn
45
Klaus Kaestner, Upenn
36
Bing Ren, UCSD
Audit category:
113
inconsistent ontology term
32
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
966 results
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total RNA-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
STARR-seq
Hi-C
snDrop-seq
Capture-C
pCHi-C
whole genome sequencing assay
tissue
adipose tissue
381
kidney
49
13
64
6
1
bone element
84
bone tissue
58
heart left ventricle
18
+ See 27 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
9
1
18
2
1
1
1
EndoC_BH1
26
2
H1-hESC
8
HEK293T
2
+ See 2 more…
primary cell
Langerhans cell
12
27
pancreatic alpha cell
6
hepatocyte
4
osteoblast
1
1
1
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