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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
79
total RNA-seq
76
ATAC-seq
68
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
79
Transcription
68
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
27
histone
27
histone modification
25
transcription factor
16
control
14
narrow histone mark
13
broad histone mark
7
RNA binding protein
6
chromatin remodeller
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
127
bed narrowPeak
79
bam
73
bigWig
64
xls
49
txt
30
fastq
30
tsv
24
tagAlign
21
bigBed narrowPeak
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
242
Homo sapiens
Biosample type
130
tissue
67
cell line
42
in vitro differentiated cells
4
primary cell
Organ
122
kidney
40
liver
18
blood
18
bodily fluid
8
embryo
7
spleen
6
epithelium
5
connective tissue
4
pancreas
1
adipose tissue
Project
243
AMP
Genome assembly (visualization)
131
GRCh38
86
hg19
Lab
120
Katalin Susztak, Upenn
83
AMP-T2D consortium
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
243 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
64
6
1
spleen
7
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
14
18
2
1
1
GM12878
18
H1-hESC
8
EndoC_BH1
2
HEK293T
2
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in vitro differentiated cells
neural progenitor cell
7
10
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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