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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
79
total RNA-seq
76
ATAC-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
79
Transcription
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
27
histone
27
histone modification
transcription factor
16
control
14
narrow histone mark
13
broad histone mark
7
RNA binding protein
6
chromatin remodeller
Date released
692
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
307
October, 2019
214
June, 2019
204
February, 2023
202
August, 2021
166
May, 2022
162
November, 2017
120
July, 2018
115
May, 2019
105
July, 2019
74
April, 2019
72
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
52
December, 2017
39
February, 2018
35
May, 2024
25
February, 2020
23
November, 2018
23
October, 2017
19
September, 2020
16
January, 2019
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2018
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
102
bed narrowPeak
65
bam
64
xls
49
txt
48
bigWig
30
tsv
24
tagAlign
16
fastq
7
bigBed narrowPeak
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
217
Homo sapiens
Biosample type
130
tissue
42
cell line
42
in vitro differentiated cells
4
primary cell
Organ
122
kidney
29
liver
8
embryo
7
spleen
6
epithelium
5
connective tissue
4
blood
4
bodily fluid
4
pancreas
1
adipose tissue
Project
218
AMP
Genome assembly (visualization)
117
GRCh38
61
hg19
Lab
120
Katalin Susztak, Upenn
69
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
218 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
64
6
1
spleen
7
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
14
7
2
1
1
H1-hESC
8
GM12878
4
EndoC_BH1
2
HEK293T
2
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in vitro differentiated cells
neural progenitor cell
7
10
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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