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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
57
total RNA-seq
32
ChIP-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
163
Transcription
82
DNA accessibility
32
DNA binding
2
3D chromatin structure
Target of assay
23
histone
23
histone modification
12
broad histone mark
11
narrow histone mark
9
control
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
106
tsv
98
bed narrowPeak
64
xls
57
txt
48
bam
31
bigWig
24
tagAlign
7
fastq
6
bigBed narrowPeak
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
281
Homo sapiens
Biosample type
236
tissue
cell line
42
in vitro differentiated cells
4
primary cell
Organ
128
kidney
92
heart
7
spleen
6
blood vessel
6
vasculature
5
connective tissue
4
epithelium
4
liver
2
artery
2
pancreas
1
adipose tissue
Project
282
AMP
Genome assembly (visualization)
103
GRCh38
43
hg19
Lab
148
AMP-T2D consortium
128
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
biosample_type!
cell line
BIOSAMPLE
ASSAY
282 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
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