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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
79
total RNA-seq
17
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
185
Transcription
17
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
16
control
1
broad histone mark
1
histone
1
histone modification
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
128
tsv
bed narrowPeak
79
bam
73
bigWig
64
xls
57
txt
30
fastq
24
tagAlign
21
bigBed narrowPeak
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
221
Homo sapiens
Biosample type
166
tissue
38
cell line
17
in vitro differentiated cells
1
primary cell
Organ
92
heart
66
kidney
23
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
blood
3
bodily fluid
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
1
spleen
Project
222
AMP
Genome assembly (visualization)
24
hg19
20
GRCh38
Lab
134
AMP-T2D consortium
64
Katalin Susztak, Upenn
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
222 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
cell line
HepG2
14
4
2
1
1
H1-hESC
8
GM12878
3
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
7
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
See all biosamples
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