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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
59
total RNA-seq
16
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
80
DNA accessibility
16
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
16
control
1
broad histone mark
1
histone
histone modification
Date released
271
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
81
May, 2020
80
October, 2019
72
May, 2021
63
August, 2017
59
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
21
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
3
October, 2017
1
August, 2018
1
August, 2022
1
September, 2018
Available data
128
tsv
101
bed narrowPeak
64
xls
57
txt
56
bam
bigWig
23
fastq
14
bigBed narrowPeak
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
274
Homo sapiens
Biosample type
230
tissue
25
cell line
19
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
18
liver
6
blood vessel
6
vasculature
4
pancreas
3
blood
3
bodily fluid
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
1
spleen
Project
275
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
128
Katalin Susztak, Upenn
123
AMP-T2D consortium
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
275 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
cell line
HepG2
9
4
2
1
1
GM12878
3
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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