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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
106
single cell RNA-seq
79
total RNA-seq
76
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
185
Transcription
148
DNA binding
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
87
histone
87
histone modification
50
broad histone mark
37
narrow histone mark
31
transcription factor
30
control
11
RNA binding protein
6
chromatin remodeller
Date released
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
192
bed narrowPeak
158
bam
138
bigWig
128
tsv
85
bigBed narrowPeak
64
xls
57
txt
30
fastq
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
428
Homo sapiens
Biosample type
316
tissue
67
cell line
42
in vitro differentiated cells
4
primary cell
Organ
153
kidney
149
heart
40
liver
18
blood
18
bodily fluid
8
embryo
7
spleen
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
429
AMP
Genome assembly (visualization)
195
GRCh38
151
hg19
Lab
261
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
429 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
23
8
49
64
6
1
heart left ventricle
35
18
heart right ventricle
13
17
left cardiac atrium
18
right cardiac atrium
18
+ See 13 more…
cell line
HepG2
18
14
2
1
1
GM12878
18
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
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