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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
total RNA-seq
99
ChIP-seq
55
ATAC-seq
Assay category
208
Transcription
99
DNA binding
55
DNA accessibility
Target of assay
50
histone
50
histone modification
39
narrow histone mark
35
control
14
transcription factor
11
broad histone mark
6
RNA binding protein
6
chromatin remodeller
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
362
bam
333
bigWig
317
tsv
154
bed narrowPeak
74
tagAlign
64
xls
57
txt
30
fastq
21
bigBed narrowPeak
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
362
Homo sapiens
Biosample type
200
tissue
94
primary cell
37
in vitro differentiated cells
31
cell line
Organ
202
liver
18
blood
18
bodily fluid
8
embryo
7
spleen
4
epithelium
Project
317
AMP
45
T1D
Genome assembly (visualization)
326
hg19
274
GRCh38
Lab
317
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
362 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
tissue
liver
143
50
spleen
7
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 21 more…
in vitro differentiated cells
neural progenitor cell
7
20
10
cell line
GM12878
18
H1-hESC
8
HepG2
5
See all biosamples
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