Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
24
DNase-seq
24
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
74
DNA binding
36
DNA accessibility
24
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
39
histone
39
histone modification
22
narrow histone mark
20
control
17
broad histone mark
15
transcription factor
5
RNA binding protein
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
104
bam
94
bigWig
89
bed narrowPeak
47
bigBed narrowPeak
29
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
24
tagAlign
24
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
145
Homo sapiens
Biosample type
tissue
59
primary cell
44
cell line
42
in vitro differentiated cells
Organ
37
liver
26
epithelium
21
connective tissue
15
kidney
11
musculature of body
8
embryo
8
heart
5
brain
4
eye
4
vasculature
2
blood vessel
2
pancreas
Project
145
AMP
Genome assembly (visualization)
99
hg19
88
GRCh38
Lab
107
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
28
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
145 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
primary cell
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
hepatocyte
4
1
cardiac muscle cell
3
1
+ See 17 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
See all biosamples
Download