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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
DNase-seq
74
ATAC-seq
39
ChIP-seq
15
total RNA-seq
Assay category
243
DNA accessibility
39
DNA binding
15
Transcription
Target of assay
35
histone
35
histone modification
20
narrow histone mark
15
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
207
May, 2020
207
October, 2019
192
June, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
282
bed narrowPeak
233
bam
223
bigWig
192
bigBed narrowPeak
172
bed bed3+
169
bed broadPeak
169
bigBed broadPeak
64
xls
16
tagAlign
15
tsv
Organism
297
Homo sapiens
Biosample type
209
tissue
50
primary cell
30
in vitro differentiated cells
8
cell line
Organ
144
kidney
41
musculature of body
33
heart
32
limb
30
brain
21
epithelium
ureter
15
connective tissue
8
embryo
7
vasculature
6
eye
5
blood vessel
5
liver
4
pancreas
2
artery
1
adipose tissue
Project
297
AMP
Genome assembly (visualization)
297
GRCh38
229
hg19
Lab
233
AMP-T2D consortium
64
Katalin Susztak, Upenn
Audit category:
22
inconsistent ontology term
organ_slims!
ureter
BIOSAMPLE
ASSAY
297 results
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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
total RNA-seq
tissue
kidney
13
64
heart
18
muscle of arm
17
muscle of leg
13
brain
12
+ See 31 more…
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
hepatocyte
1
3
cardiac muscle cell
1
2
+ See 17 more…
in vitro differentiated cells
neural progenitor cell
10
13
7
cell line
H1-hESC
8
See all biosamples
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