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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
76
ATAC-seq
65
total RNA-seq
42
ChIP-seq
6
DNase-seq
6
WGBS
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
FAIRE-seq
1
RNA microarray
Assay category
172
Transcription
89
DNA accessibility
42
DNA binding
6
DNA methylation
2
3D chromatin structure
Target of assay
15
transcription factor
14
histone
14
histone modification
13
control
7
broad histone mark
7
narrow histone mark
3
other context
3
other post-translational modification
2
RNA binding protein
2
chromatin remodeller
Date released
712
February, 2021
399
May, 2021
357
August, 2017
307
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
114
tsv
111
bed narrowPeak
79
bam
64
xls
58
bigWig
57
txt
35
fastq
22
bigBed narrowPeak
20
tagAlign
8
bed bed3+
6
bed bedMethyl
6
bed broadPeak
6
bigBed bedMethyl
6
bigBed broadPeak
1
bedpe bed3+
1
csv
1
hic
Organism
318
Homo sapiens
Biosample type
248
tissue
42
in vitro differentiated cells
28
cell line
1
primary cell
Organ
130
kidney
92
heart
liver
15
blood
15
bodily fluid
11
pancreas
9
spleen
8
embryo
6
blood vessel
6
connective tissue
6
epithelium
6
vasculature
2
adipose tissue
2
artery
2
brain
Project
319
AMP
Genome assembly (visualization)
129
GRCh38
64
hg19
Lab
182
AMP-T2D consortium
128
Katalin Susztak, Upenn
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
319 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
WGBS
snATAC-seq
Capture-C
STARR-seq
Hi-C
FAIRE-seq
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 16 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
GM12878
15
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
pancreatic cell
1
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