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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
76
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
117
DNA binding
Target of assay
50
histone
50
histone modification
41
control
28
broad histone mark
26
transcription factor
22
narrow histone mark
12
RNA binding protein
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
98
bam
75
bed narrowPeak
75
bigWig
58
fastq
45
bigBed narrowPeak
24
tagAlign
3
bed bed3+
Organism
117
Homo sapiens
Biosample type
74
tissue
21
in vitro differentiated cells
18
cell line
4
primary cell
Organ
51
pancreas
23
adipose tissue
23
connective tissue
22
liver
4
epithelium
Project
117
AMP
Genome assembly (visualization)
74
hg19
61
GRCh38
Lab
99
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
117 results
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Clear Filters
ChIP-seq
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
pancreas
2
in vitro differentiated cells
neural progenitor cell
21
cell line
HepG2
18
primary cell
hepatocyte
4
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