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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ChIP-seq
64
ATAC-seq
50
total RNA-seq
6
snATAC-seq
2
Hi-C
1
RNA microarray
Assay category
156
Transcription
74
DNA binding
70
DNA accessibility
2
3D chromatin structure
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
109
bed narrowPeak
99
tsv
74
bam
64
xls
58
fastq
57
txt
45
bigBed narrowPeak
45
bigWig
1
bedpe bed3+
1
hic
Organism
302
Homo sapiens
Biosample type
303
tissue
44
cell line
42
in vitro differentiated cells
6
primary cell
Organ
128
kidney
92
heart
53
pancreas
24
adipose tissue
24
connective tissue
6
blood vessel
6
vasculature
2
artery
Project
303
AMP
Genome assembly (visualization)
109
GRCh38
46
hg19
Lab
173
AMP-T2D consortium
128
Katalin Susztak, Upenn
2
Bing Ren, UCSD
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
303 results
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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
body of pancreas
33
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
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