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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
100
total RNA-seq
90
ATAC-seq
75
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
75
DNA binding
Target of assay
52
histone
52
histone modification
26
broad histone mark
26
narrow histone mark
12
control
11
transcription factor
1
RNA binding protein
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
62
bed narrowPeak
62
bigWig
56
bam
32
fastq
24
tagAlign
3
bed bed3+
Organism
75
Homo sapiens
Biosample type
36
primary cell
21
in vitro differentiated cells
18
cell line
Organ
32
pancreas
25
epithelium
22
liver
Project
75
AMP
Genome assembly (visualization)
61
hg19
48
GRCh38
Lab
57
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
primary cell
pancreatic ductal cell
13
pancreatic endocrine cell
11
pancreatic acinar cell
8
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
21
cell line
HepG2
18
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