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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
39
ChIP-seq
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
220
Transcription
76
DNA accessibility
39
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
656
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
307
August, 2021
279
October, 2019
198
June, 2019
151
February, 2023
135
July, 2018
115
May, 2019
98
May, 2022
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
April, 2018
15
May, 2023
12
September, 2018
10
November, 2020
9
April, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
October, 2022
Available data
123
tsv
103
bed narrowPeak
64
xls
57
txt
45
bam
44
bigWig
22
fastq
20
tagAlign
19
zippedFastqFolder
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
346
Homo sapiens
Biosample type
223
tissue
42
cell line
42
in vitro differentiated cells
40
primary cell
Organ
124
kidney
92
heart
35
liver
epithelium
23
pancreas
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
2
artery
1
adipose tissue
Project
307
AMP
40
HPAP
Genome assembly (visualization)
102
GRCh38
57
hg19
Lab
145
AMP-T2D consortium
122
Katalin Susztak, Upenn
40
Klaus Kaestner, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
snATAC-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
347 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
Langerhans cell
40
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