Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
single cell RNA-seq
83
total RNA-seq
67
ATAC-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
229
Transcription
73
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
681
February, 2021
291
May, 2020
255
August, 2021
200
May, 2022
February, 2023
187
June, 2019
168
July, 2018
145
May, 2021
114
August, 2017
108
July, 2019
64
October, 2019
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
43
November, 2019
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
May, 2023
8
December, 2019
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
116
tsv
64
bed narrowPeak
64
xls
57
txt
41
fastq
19
zippedFastqFolder
11
bigWig
8
bam
2
bedpe bed3+
2
hic
1
vcf
Organism
313
Homo sapiens
Biosample type
229
tissue
59
primary cell
26
cell line
in vitro differentiated cells
Organ
130
kidney
92
heart
23
pancreas
21
epithelium
13
liver
8
embryo
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
1
connective tissue
Project
255
AMP
59
HPAP
Genome assembly (visualization)
75
GRCh38
10
hg19
Lab
128
Katalin Susztak, Upenn
109
AMP-T2D consortium
59
Klaus Kaestner, Upenn
18
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
month_released!
February, 2023
biosample_type!
in vitro differentiated cells
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
314 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
cell line
HepG2
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
See all biosamples
Download