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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
single cell RNA-seq
ATAC-seq
74
total RNA-seq
31
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
178
Transcription
31
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
634
February, 2021
356
August, 2017
356
May, 2021
335
November, 2017
233
October, 2019
229
August, 2021
218
May, 2020
208
June, 2019
168
July, 2018
123
May, 2022
102
February, 2023
97
July, 2019
94
May, 2019
82
November, 2018
73
December, 2017
66
April, 2019
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
33
November, 2019
31
December, 2018
31
February, 2018
26
January, 2019
23
February, 2020
19
April, 2020
16
January, 2021
12
October, 2017
10
December, 2019
10
November, 2020
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
121
tsv
57
txt
45
bigWig
31
bam
30
bed narrowPeak
16
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
228
Homo sapiens
Biosample type
163
tissue
40
cell line
23
in vitro differentiated cells
3
primary cell
Organ
92
heart
66
kidney
30
liver
8
embryo
6
blood vessel
6
vasculature
5
epithelium
4
pancreas
3
connective tissue
artery
1
adipose tissue
Project
229
AMP
Genome assembly (visualization)
48
hg19
31
GRCh38
Lab
131
AMP-T2D consortium
64
Katalin Susztak, Upenn
32
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
artery
target.investigated_as!
control
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
229 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
14
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
14
adipocyte
1
osteoblast
1
primary cell
hepatocyte
3
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