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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
74
total RNA-seq
43
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
88
Transcription
82
DNA accessibility
43
DNA binding
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
302
October, 2019
224
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
76
October, 2018
75
July, 2019
73
September, 2018
59
November, 2019
59
September, 2020
49
April, 2018
49
March, 2020
47
September, 2023
39
February, 2018
34
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
31
tsv
24
tagAlign
5
bed bed3+
1
vcf
Organism
223
Homo sapiens
Biosample type
135
tissue
43
cell line
42
in vitro differentiated cells
4
primary cell
Organ
129
kidney
heart
34
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
3
pancreas
2
artery
1
adipose tissue
Project
224
AMP
Genome assembly (visualization)
105
GRCh38
58
hg19
Lab
127
Katalin Susztak, Upenn
59
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
heart
assay_title!
Hi-C
BIOSAMPLE
ASSAY
224 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
aorta
4
pulmonary artery
2
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
9
18
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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