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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
57
total RNA-seq
25
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
82
DNA accessibility
71
Transcription
25
DNA binding
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
619
February, 2021
411
August, 2017
375
May, 2021
340
May, 2020
276
October, 2019
200
May, 2022
183
August, 2021
183
June, 2019
168
July, 2018
163
February, 2023
99
May, 2019
94
December, 2017
91
November, 2017
83
July, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
46
March, 2020
45
November, 2019
39
February, 2018
27
November, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
92
bed narrowPeak
64
xls
57
txt
41
bam
25
bigWig
24
tagAlign
14
tsv
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
182
Homo sapiens
Biosample type
137
tissue
cell line
42
in vitro differentiated cells
4
primary cell
Organ
128
kidney
heart
6
blood vessel
6
vasculature
5
connective tissue
4
epithelium
4
liver
2
artery
2
pancreas
1
adipose tissue
Project
183
AMP
Genome assembly (visualization)
97
GRCh38
37
hg19
Lab
128
Katalin Susztak, Upenn
49
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
organ_slims!
heart
biosample_type!
cell line
BIOSAMPLE
ASSAY
183 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
64
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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