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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
65
total RNA-seq
21
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
82
DNA accessibility
79
Transcription
21
DNA binding
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
646
February, 2021
396
May, 2021
357
August, 2017
299
October, 2019
192
August, 2021
181
June, 2019
169
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
99
May, 2019
91
November, 2017
76
October, 2018
73
July, 2019
73
September, 2018
61
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
23
April, 2019
23
October, 2017
21
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
89
bed narrowPeak
64
xls
57
txt
45
bam
30
bigWig
22
tsv
20
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
191
Homo sapiens
Biosample type
137
tissue
42
in vitro differentiated cells
13
cell line
Organ
130
kidney
heart
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
192
AMP
Genome assembly (visualization)
102
GRCh38
42
hg19
Lab
128
Katalin Susztak, Upenn
55
AMP-T2D consortium
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
heart
liver
BIOSAMPLE
ASSAY
192 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
64
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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