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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
21
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
82
DNA accessibility
57
Transcription
21
DNA binding
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
292
October, 2019
268
August, 2017
226
May, 2021
216
June, 2019
189
February, 2023
170
August, 2021
160
May, 2022
153
February, 2021
120
May, 2019
102
May, 2020
91
November, 2017
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
41
November, 2019
40
July, 2019
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
18
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
89
bed narrowPeak
64
xls
57
txt
45
bam
30
bigWig
20
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
169
Homo sapiens
Biosample type
130
tissue
35
in vitro differentiated cells
5
cell line
Organ
130
kidney
liver
6
epithelium
5
connective tissue
3
pancreas
1
adipose tissue
Project
170
AMP
Genome assembly (visualization)
87
GRCh38
27
hg19
Lab
128
Katalin Susztak, Upenn
34
AMP-T2D consortium
4
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
liver
files.file_type!
tsv
BIOSAMPLE
ASSAY
170 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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