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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
total RNA-seq
64
ATAC-seq
22
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
172
Transcription
70
DNA accessibility
22
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
657
February, 2021
406
November, 2017
341
May, 2020
288
October, 2019
273
August, 2021
214
June, 2019
209
May, 2021
155
August, 2017
133
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
81
November, 2018
80
April, 2019
51
December, 2017
47
September, 2023
42
March, 2020
40
May, 2024
40
September, 2020
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
8
December, 2019
8
January, 2021
6
November, 2020
5
March, 2023
4
January, 2018
2
June, 2018
1
November, 2019
1
October, 2022
1
September, 2018
Available data
115
tsv
81
bed narrowPeak
64
xls
57
txt
25
bigWig
12
bam
4
tagAlign
3
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
272
Homo sapiens
Biosample type
227
tissue
42
cell line
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
pancreas
2
artery
1
adipose tissue
1
connective tissue
Project
273
AMP
Genome assembly (visualization)
75
GRCh38
27
hg19
Lab
128
Katalin Susztak, Upenn
111
AMP-T2D consortium
34
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
273 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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