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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
9
total RNA-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
20
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
broad histone mark
1
RNA binding protein
Date released
307
November, 2017
194
May, 2020
53
December, 2017
53
November, 2018
40
May, 2022
35
August, 2017
33
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
15
bed narrowPeak
15
bigWig
9
tsv
3
bam
3
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
33
Homo sapiens
Biosample type
30
cell line
3
primary cell
Organ
130
kidney
92
heart
33
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
5
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
33
AMP
Genome assembly (visualization)
16
hg19
2
GRCh38
Lab
30
Bing Ren, UCSD
3
AMP-T2D consortium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
33 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
17
9
2
1
1
primary cell
hepatocyte
3
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