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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
15
ChIP-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
17
Transcription
15
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
300
November, 2017
96
February, 2021
61
November, 2018
41
August, 2021
28
December, 2018
23
October, 2019
22
January, 2019
20
May, 2021
10
March, 2020
6
February, 2023
6
November, 2019
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
19
bigWig
17
tsv
11
bed narrowPeak
8
bam
1
bedpe bed3+
1
hic
1
vcf
Organism
41
Homo sapiens
Biosample type
229
tissue
41
cell line
28
in vitro differentiated cells
1
primary cell
Organ
28
liver
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
41
AMP
Genome assembly (visualization)
20
hg19
8
GRCh38
Lab
31
Bing Ren, UCSD
10
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
41 results
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total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
9
15
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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