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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
32
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
180
Transcription
80
DNA accessibility
32
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
368
November, 2017
333
May, 2021
314
May, 2020
303
August, 2021
260
February, 2021
226
August, 2017
200
May, 2022
193
June, 2019
191
February, 2023
170
October, 2019
166
July, 2018
90
July, 2019
87
November, 2018
86
May, 2019
78
December, 2017
59
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
56
November, 2019
47
April, 2018
47
September, 2023
42
October, 2018
35
December, 2018
31
February, 2018
27
January, 2019
25
May, 2024
23
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
123
tsv
93
bed narrowPeak
64
xls
57
txt
40
bam
34
bigWig
15
tagAlign
2
bedpe bed3+
2
hic
1
bed bed3+
1
vcf
Organism
303
Homo sapiens
Biosample type
228
tissue
42
cell line
31
in vitro differentiated cells
2
primary cell
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
connective tissue
4
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
303
AMP
Genome assembly (visualization)
96
GRCh38
45
hg19
Lab
141
AMP-T2D consortium
128
Katalin Susztak, Upenn
34
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
target.investigated_as!
narrow histone mark
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
303 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
16
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
primary cell
hepatocyte
2
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