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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
total RNA-seq
35
ChIP-seq
32
pCHi-C
18
ATAC-seq
10
Hi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
42
Transcription
35
DNA binding
19
DNA accessibility
10
3D chromatin structure
Target of assay
35
histone
35
histone modification
18
narrow histone mark
17
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
92
bigWig
88
bam
73
fastq
71
tsv
49
bed narrowPeak
14
bigBed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
1
csv
Organism
138
Homo sapiens
Biosample type
74
primary cell
41
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
Organ
87
pancreas
67
epithelium
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
131
AMP
7
T1D
Genome assembly (visualization)
104
hg19
88
GRCh38
Lab
138
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
1
audit script error
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
138 results
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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
Hi-C
single cell RNA-seq
snATAC-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 2 more…
tissue
islet of Langerhans
2
2
2
1
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
1
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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