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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
32
pCHi-C
31
total RNA-seq
10
Hi-C
7
ATAC-seq
3
ChIP-seq
1
snATAC-seq
Assay category
71
Transcription
10
3D chromatin structure
8
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
45
tsv
41
fastq
23
bigWig
19
zippedFastqFolder
16
bam
12
bedpe bed3+
10
hic
3
bed narrowPeak
2
ibed
Organism
124
Homo sapiens
Biosample type
60
primary cell
41
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
Organ
34
pancreas
25
epithelium
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
59
HPAP
58
AMP
7
T1D
Genome assembly (visualization)
32
hg19
19
GRCh38
Lab
65
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
124 results
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Clear Filters
single cell RNA-seq
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
2
2
2
1
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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