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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
6
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
46
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
26
histone
26
histone modification
14
narrow histone mark
12
broad histone mark
12
control
11
transcription factor
3
nucleotide modification
2
RNA binding protein
1
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
52
bam
46
fastq
41
bigWig
38
bed narrowPeak
16
bed bed3+
15
bigBed narrowPeak
4
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
58
Homo sapiens
Biosample type
tissue
43
in vitro differentiated cells
6
cell line
6
primary cell
3
stem cell
Organ
25
epithelium
15
liver
13
embryo
6
connective tissue
6
pancreas
Project
58
AMP
Genome assembly (visualization)
47
GRCh38
47
hg19
Lab
52
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
biosample_type!
tissue
BIOSAMPLE
ASSAY
58 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
1
stem cell
hESC
3
See all biosamples
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