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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
82
DNA binding
10
DNA accessibility
Target of assay
47
histone
47
histone modification
35
transcription factor
28
broad histone mark
19
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
381
fastq
376
bam
344
bigWig
214
bed narrowPeak
92
bigBed narrowPeak
89
tsv
85
tagAlign
48
bed bed3+
41
bed broadPeak
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
86
Homo sapiens
Biosample type
58
tissue
19
primary cell
15
in vitro differentiated cells
Organ
56
liver
17
epithelium
17
pancreas
3
connective tissue
2
adipose tissue
Project
92
AMP
Genome assembly (visualization)
92
hg19
88
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
34
pancreas
12
right lobe of liver
7
1
islet of Langerhans
1
1
adipose tissue
1
+ See 1 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
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