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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
Assay category
51
DNA binding
Target of assay
53
transcription factor
51
histone
51
histone modification
33
control
27
narrow histone mark
24
broad histone mark
5
RNA binding protein
3
chromatin remodeller
Date released
199
August, 2017
196
October, 2019
140
May, 2021
92
May, 2019
88
November, 2017
60
April, 2019
35
May, 2024
32
September, 2018
31
December, 2017
30
October, 2018
27
May, 2020
20
August, 2021
19
June, 2019
16
February, 2018
12
October, 2017
10
November, 2019
7
January, 2019
3
March, 2020
Available data
49
bed narrowPeak
49
bigWig
47
bam
31
fastq
17
bigBed narrowPeak
16
tagAlign
13
bed bed3+
Organism
51
Homo sapiens
Biosample type
38
in vitro differentiated cells
5
tissue
3
cell line
3
primary cell
2
stem cell
Organ
23
liver
17
epithelium
6
embryo
Project
51
AMP
Genome assembly (visualization)
48
hg19
46
GRCh38
Lab
48
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
in vitro differentiated cells
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
4
Hepatic endoderm
2
Posterior foregut
2
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tissue
right lobe of liver
5
cell line
HepG2
3
primary cell
hepatocyte
3
stem cell
hESC
2
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