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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
79
DNA binding
8
Transcription
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
84
bam
79
fastq
62
bigWig
57
bed narrowPeak
40
bigBed narrowPeak
10
bed bed3+
9
tsv
Organism
89
Homo sapiens
Biosample type
48
tissue
34
in vitro differentiated cells
5
primary cell
2
stem cell
Organ
58
liver
18
epithelium
12
embryo
3
kidney
Project
89
AMP
Genome assembly (visualization)
67
GRCh38
67
hg19
Lab
89
AMP-T2D consortium
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
liver
38
right lobe of liver
7
kidney
1
kidney interstitium
1
renal glomerulus
1
in vitro differentiated cells
hepatocyte
8
pancreatic endoderm
8
Hepatic endoderm
4
Posterior foregut
4
definitive endodermal cell
4
+ See 2 more…
primary cell
hepatocyte
5
stem cell
hESC
2
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