Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
24
total RNA-seq
5
GRO-seq
3
ATAC-seq
Assay category
94
DNA binding
24
Transcription
3
DNA accessibility
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
99
fastq
94
bam
80
bigWig
72
bed narrowPeak
50
bigBed narrowPeak
24
tsv
15
bed bed3+
Organism
126
Homo sapiens
Biosample type
74
tissue
47
in vitro differentiated cells
4
stem cell
1
cell line
Organ
64
liver
19
epithelium
14
embryo
12
brain
3
adipose tissue
3
blood vessel
3
connective tissue
3
heart
3
limb
3
musculature of body
3
vasculature
2
artery
1
blood
1
bodily fluid
1
eye
1
nerve
pancreas
1
spinal cord
Project
126
AMP
Genome assembly (visualization)
80
hg19
77
GRCh38
5
hg18
Lab
126
AMP-T2D consortium
Audit category:
27
inconsistent control
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
126 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
ATAC-seq
tissue
liver
38
right lobe of liver
10
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
adipose tissue
1
+ See 22 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
1
Posterior foregut
5
1
definitive endodermal cell
5
1
primitive gut cell
5
1
+ See 1 more…
stem cell
hESC
3
1
cell line
GM12878
1
See all biosamples
Download