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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
40
single cell RNA-seq
24
total RNA-seq
Assay category
94
DNA binding
64
Transcription
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
116
fastq
94
bam
72
bed narrowPeak
72
bigWig
50
bigBed narrowPeak
24
tsv
19
zippedFastqFolder
15
bed bed3+
Organism
158
Homo sapiens
Biosample type
72
tissue
43
in vitro differentiated cells
40
primary cell
3
stem cell
Organ
64
liver
38
epithelium
pancreas
13
embryo
12
brain
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
118
AMP
40
HPAP
Genome assembly (visualization)
77
GRCh38
77
hg19
Lab
118
AMP-T2D consortium
40
Klaus Kaestner, Upenn
Audit category:
27
inconsistent control
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
158 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
tissue
liver
38
right lobe of liver
10
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
+ See 20 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
primary cell
Langerhans cell
40
stem cell
hESC
3
See all biosamples
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