Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
75
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
40
transcription factor
18
control
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
76
bam
76
fastq
56
bed narrowPeak
56
bigWig
36
bigBed narrowPeak
15
bed bed3+
1
bed broadPeak
1
bedpe
1
hic
Organism
80
Homo sapiens
Biosample type
53
tissue
24
in vitro differentiated cells
3
stem cell
Organ
63
liver
epithelium
13
embryo
5
pancreas
Project
80
AMP
Genome assembly (visualization)
64
hg19
63
GRCh38
Lab
75
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
27
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
80 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
Hi-C
tissue
liver
38
right lobe of liver
10
islet of Langerhans
4
1
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
stem cell
hESC
3
Download