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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
17
ChIP-seq
Assay category
99
DNA accessibility
60
Transcription
41
DNA methylation
17
DNA binding
Target of assay
16
control
1
histone
1
histone modification
1
narrow histone mark
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
134
zippedFastqFolder
41
bam
41
fastq
38
bed narrowPeak
20
bigWig
7
txt
1
bed bed3+
Organism
217
Homo sapiens
Biosample type
134
primary cell
78
tissue
5
in vitro differentiated cells
Organ
104
pancreas
83
epithelium
53
liver
4
embryo
2
musculature of body
Project
134
HPAP
83
AMP
Genome assembly (visualization)
116
hg19
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
19
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
217 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
9
islet of Langerhans
18
6
right lobe of liver
3
skeletal muscle tissue
1
1
in vitro differentiated cells
Hepatic endoderm
2
pancreatic endoderm
2
hepatocyte
1
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